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JASPAR matrix models:
ID name species class family Sequence logo
MA0020.1  Dof2  Zea mays   C2H2 zinc finger factors  Dof-type 
MA0021.1  Dof3  Zea mays   C2H2 zinc finger factors  Dof-type 
MA0034.1  Gam1  Hordeum vulgare   Tryptophan cluster factors  Myb/SANT domain factors 
MA0044.1  HMG-1  Pisum sativum   High-mobility group (HMG) domain factors 
MA0045.1  HMG-I/Y  Pisum sativum   High-mobility group (HMG) domain factors 
MA0053.1  MNB1A  Zea mays   C2H2 zinc finger factors  Dof-type 
MA0054.1  myb.Ph3  Petunia x hybrida   Tryptophan cluster factors  Myb/SANT domain factors 
MA0064.1  PBF  Zea mays   C2H2 zinc finger factors  Dof-type 
MA0082.1  squamosa  Antirrhinum majus   MADS box factors 
MA0096.1  bZIP910  Antirrhinum majus   Basic leucine zipper factors (bZIP) 
MA0097.1  bZIP911  Antirrhinum majus   Basic leucine zipper factors (bZIP) 
MA0120.1  id1  Zea mays   C2H2 zinc finger factors 
MA0121.1  ARR10  Arabidopsis thaliana   Tryptophan cluster factors  Myb/SANT domain factors 
MA0123.1  abi4  Zea mays   AP2/ERF domain 
MA0127.1  PEND  Pisum sativum  
MA0128.1  EmBP-1  Triticum aestivum   Basic leucine zipper factors (bZIP) 
MA0129.1  TGA1A  Nicotiana sp.   Basic leucine zipper factors (bZIP) 
MA0548.1  AGL15  Arabidopsis thaliana   MADS box factors 
MA0549.1  BZR2  Arabidopsis thaliana  
MA0550.1  BZR1  Arabidopsis thaliana  
MA0551.1  HY5  Arabidopsis thaliana   Basic leucine zipper factors (bZIP) 
MA0552.1  PIF1  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH) 
MA0553.1  SMZ  Arabidopsis thaliana   AP2/ERF domain 
MA0554.1  SOC1  Arabidopsis thaliana   MADS box factors 
MA0555.1  SVP  Arabidopsis thaliana   MADS box factors 
MA0556.1  AP3  Arabidopsis thaliana   MADS box factors 
MA0557.1  FHY3  Arabidopsis thaliana   SWIM-type zinc finger 
MA0558.1  FLC  Arabidopsis thaliana   MADS box factors 
MA0559.1  PI  Arabidopsis thaliana   MADS box factors 
MA0560.1  PIF3  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH) 
MA0561.1  PIF4  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH) 
MA0562.1  PIF5  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH) 
MA0563.1  SEP3  Arabidopsis thaliana   MADS box factors 
MA0564.1  ABI3  Arabidopsis thaliana   B3 domain 
MA0565.1  FUS3  Arabidopsis thaliana   B3 domain 
MA0566.1  MYC2  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH) 
MA0567.1  ERF1B  Arabidopsis thaliana   AP2/ERF domain 
MA0568.1  MYC3  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH) 
MA0569.1  MYC4  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH) 
MA0570.1  ABF1  Arabidopsis thaliana   Basic leucine zipper factors (bZIP) 
MA0005.2  AG  Arabidopsis thaliana   MADS box factors 
MA0571.1  ANT  Arabidopsis thaliana   AP2/ERF domain 
MA0008.2  HAT5  Arabidopsis thaliana   Homeo domain factors 
MA0110.2  ATHB-5  Arabidopsis thaliana   Homeo domain factors 
MA0573.1  ATHB-9  Arabidopsis thaliana   Homeo domain factors 
MA0574.1  MYB15  Arabidopsis thaliana   Tryptophan cluster factors  Myb/SANT domain factors 
MA0575.1  F3A4.140  Arabidopsis thaliana   Tryptophan cluster factors  Myb/SANT domain factors 
MA0576.1  RAX3  Arabidopsis thaliana   Tryptophan cluster factors  Myb/SANT domain factors 
MA0577.1  SPL3  Arabidopsis thaliana   SBP-type zinc finger 
MA0578.1  SPL8  Arabidopsis thaliana   SBP-type zinc finger 
MA0579.1  CDC5  Arabidopsis thaliana   Tryptophan cluster factors  Myb/SANT domain factors 
MA0580.1  DYT1  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH) 
MA0581.1  LEC2  Arabidopsis thaliana   B3 domain 
MA0582.1  RAV1  Arabidopsis thaliana   AP2/ERF domain 
MA0583.1  RAV1(var.2)  Arabidopsis thaliana   AP2/ERF domain 
MA0584.1  SEP1  Arabidopsis thaliana   MADS box factors 
MA0001.2  AGL3  Arabidopsis thaliana   MADS box factors 
MA0585.1  AGL1  Arabidopsis thaliana   MADS box factors 
MA0586.1  SPL14  Arabidopsis thaliana   SBP-type zinc finger 
MA0587.1  TCP16  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH)  TCP domain 
MA0588.1  TGA1  Arabidopsis thaliana   Basic leucine zipper factors (bZIP) 
MA0589.1  ZAP1  Arabidopsis thaliana   WRKY 
MA0590.1  LFY  Arabidopsis thaliana  
MA0930.1  ABF3  Arabidopsis thaliana   Basic leucine zipper factors (bZIP) 
MA0931.1  ABI5  Arabidopsis thaliana   Basic leucine zipper factors (bZIP) 
MA0932.1  AHL12  Arabidopsis thaliana   A.T hook factors  HMGA factors 
MA0933.1  AHL20  Arabidopsis thaliana   A.T hook factors  HMGA factors 
MA0934.1  AHL25  Arabidopsis thaliana   A.T hook factors  HMGA factors 
MA0935.1  NAC025  Arabidopsis thaliana   NAC/NAM 
MA0936.1  T11I18.17  Arabidopsis thaliana   NAC/NAM 
MA0937.1  NAC055  Arabidopsis thaliana   NAC/NAM 
MA0938.1  NAC058  Arabidopsis thaliana   NAC/NAM 
MA0939.1  NAC080  Arabidopsis thaliana   NAC/NAM 
MA0940.1  AP1  Arabidopsis thaliana   MADS box factors 
MA0941.1  ABF2  Arabidopsis thaliana   Basic leucine zipper factors (bZIP) 
MA0942.1  ARF1  Arabidopsis thaliana   B3 domain 
MA0943.1  ARF5  Arabidopsis thaliana   B3 domain 
MA0944.1  ARF8  Arabidopsis thaliana   B3 domain 
MA0945.1  ARR1  Arabidopsis thaliana   Tryptophan cluster factors  Myb/SANT domain factors 
MA0946.1  ARR11  Arabidopsis thaliana   Tryptophan cluster factors  Myb/SANT domain factors 
MA0947.1  ARR14  Arabidopsis thaliana   Tryptophan cluster factors  Myb/SANT domain factors 
MA0948.1  ARR18  Arabidopsis thaliana   Tryptophan cluster factors  Myb/SANT domain factors 
MA0949.1  ARR2  Arabidopsis thaliana   Tryptophan cluster factors  Myb/SANT domain factors 
MA0950.1  ATHB-12  Arabidopsis thaliana   Homeo domain factors  HD-ZIP factors 
MA0951.1  ATHB-16  Arabidopsis thaliana   Homeo domain factors  HD-ZIP factors 
MA0952.1  ATHB-51  Arabidopsis thaliana   Homeo domain factors  HD-ZIP factors 
MA0953.1  ATHB-6  Arabidopsis thaliana   Homeo domain factors  HD-ZIP factors 
MA0954.1  ATHB-7  Arabidopsis thaliana   Homeo domain factors  HD-ZIP factors 
MA0955.1  POPTR_0002s00440g  Populus trichocarpa   SBP-type zinc finger 
MA0956.1  BEE2  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH) 
MA0957.1  BHLH3  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH) 
MA0958.1  BHLH13  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH) 
MA0959.1  AIB  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH) 
MA0960.1  BHLH104  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH) 
MA0961.1  BHLH112  Oryza sativa Japonica Group   Basic helix-loop-helix factors (bHLH) 
MA0962.1  BHLH34  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH) 
MA0963.1  BHLH78  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH) 
MA0964.1  BIM1  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH) 
MA0965.1  BIM2  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH) 
MA0966.1  BIM3  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH) 
MA0967.1  BZIP60  Arabidopsis thaliana   Basic leucine zipper factors (bZIP) 
MA0968.1  bZIP68  Arabidopsis thaliana   Basic leucine zipper factors (bZIP) 
MA0969.1  CMTA2  Arabidopsis thaliana   CG-1 domain 
MA0970.1  CMTA3  Arabidopsis thaliana   CG-1 domain 
MA0971.1  DREB1A  Arabidopsis thaliana   AP2/ERF domain 
MA0972.1  CCA1  Arabidopsis thaliana   Tryptophan cluster factors  Myb/SANT domain factors 
MA0973.1  CDF2  Arabidopsis thaliana   C2H2 zinc finger factors  Dof-type 
MA0974.1  CDF3  Arabidopsis thaliana   C2H2 zinc finger factors  Dof-type 
MA0975.1  CRF2  Arabidopsis thaliana   AP2/ERF domain 
MA0976.1  CRF4  Arabidopsis thaliana   AP2/ERF domain 
MA0977.1  DOF2.5  Arabidopsis thaliana   C2H2 zinc finger factors  Dof-type 
MA0978.1  DREB1E  Arabidopsis thaliana   AP2/ERF domain 
MA0979.1  ERF008  Arabidopsis thaliana   AP2/ERF domain 
MA0980.1  RAP2-10  Arabidopsis thaliana   AP2/ERF domain 
MA0981.1  DOF1.8  Arabidopsis thaliana   C2H2 zinc finger factors  Dof-type 
MA0982.1  DOF2.4  Arabidopsis thaliana   C2H2 zinc finger factors  Dof-type 
MA0983.1  DOF5.6  Arabidopsis thaliana   C2H2 zinc finger factors  Dof-type 
MA0984.1  DOF5.7  Arabidopsis thaliana   C2H2 zinc finger factors  Dof-type 
MA0985.1  DRE1C  Arabidopsis thaliana   Beta-Hairpin-Ribbon  AP2 MBD_like 
MA0986.1  DREB2C  Arabidopsis thaliana   AP2/ERF domain 
MA0987.1  PHYPADRAFT_140773  Physcomitrella patens   C2H2 zinc finger factors  Dof-type 
MA0988.1  PHYPADRAFT_143875  Physcomitrella patens   Basic helix-loop-helix factors (bHLH) 
MA0989.1  PHYPADRAFT_153324  Physcomitrella patens   C2H2 zinc finger factors  Dof-type 
MA0990.1  EDT1  Arabidopsis thaliana   Homeo domain factors  HD-ZIP factors 
MA0992.1  ERF4  Arabidopsis thaliana   AP2/ERF domain 
MA0993.1  ERF7  Arabidopsis thaliana   AP2/ERF domain 
MA0994.1  ERF8  Arabidopsis thaliana   AP2/ERF domain 
MA0995.1  ERF039  Arabidopsis thaliana   AP2/ERF domain 
MA0996.1  ERF043  Arabidopsis thaliana   AP2/ERF domain 
MA0997.1  ERF069  Arabidopsis thaliana   AP2/ERF domain 
MA0998.1  ERF096  Arabidopsis thaliana   AP2/ERF domain 
MA0999.1  ERF098  Arabidopsis thaliana   AP2/ERF domain 
MA1000.1  ERF105  Arabidopsis thaliana   AP2/ERF domain 
MA1001.1  ERF11  Arabidopsis thaliana   AP2/ERF domain 
MA1002.1  ERF112  Arabidopsis thaliana   AP2/ERF domain 
MA1004.1  ERF13  Arabidopsis thaliana   AP2/ERF domain 
MA1005.1  ERF3  Arabidopsis thaliana   AP2/ERF domain 
MA1006.1  ERF6  Arabidopsis thaliana   AP2/ERF domain 
MA1007.1  PHYPADRAFT_173530  Physcomitrella patens   AP2/ERF domain 
MA1008.1  PHYPADRAFT_182268  Physcomitrella patens   AP2/ERF domain 
MA1009.1  ARF3  Arabidopsis thaliana   B3 domain 
MA1010.1  PHYPADRAFT_64121  Physcomitrella patens   AP2/ERF domain 
MA1011.1  PHYPADRAFT_72483  Physcomitrella patens   Basic helix-loop-helix factors (bHLH) 
MA1012.1  AGL27  Arabidopsis thaliana   MADS box factors 
MA1013.1  GATA10  Arabidopsis thaliana   Other C4 zinc finger-type factors  GATA-type zinc fingers 
MA1014.1  GATA11  Arabidopsis thaliana   Other C4 zinc finger-type factors  GATA-type zinc fingers 
MA1015.1  GATA12  Arabidopsis thaliana   Other C4 zinc finger-type factors  GATA-type zinc fingers 
MA1016.1  GATA15  Arabidopsis thaliana   Other C4 zinc finger-type factors  GATA-type zinc fingers 
MA1017.1  GATA8  Arabidopsis thaliana   Other C4 zinc finger-type factors  GATA-type zinc fingers 
MA1018.1  GATA9  Arabidopsis thaliana   Other C4 zinc finger-type factors  GATA-type zinc fingers 
MA1019.1  Glyma19g26560.1  Glycine max   Basic helix-loop-helix factors (bHLH)  TCP domain 
MA1020.1  GT-1  Arabidopsis thaliana   Tryptophan cluster factors  Myb/SANT domain factors 
MA1021.1  PHYPADRAFT_48267  Physcomitrella patens   Basic helix-loop-helix factors (bHLH) 
MA1022.1  PHYPADRAFT_38837  Physcomitrella patens   C2H2 zinc finger factors  Dof-type 
MA1023.1  PHYPADRAFT_28324  Physcomitrella patens   AP2/ERF domain 
MA1024.1  HAT1  Arabidopsis thaliana   Homeo domain factors  HD-ZIP factors 
MA1025.1  HBI1  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH) 
MA1026.1  ATHB-15  Arabidopsis thaliana   Homeo domain factors  HD-ZIP factors 
MA1027.1  KAN1  Arabidopsis thaliana   Tryptophan cluster factors  Myb/SANT domain factors 
MA1028.1  KAN4  Arabidopsis thaliana   Tryptophan cluster factors  Myb/SANT domain factors 
MA1030.1  P0510F09.23  Oryza sativa Japonica Group   Tryptophan cluster factors  Myb/SANT domain factors 
MA1031.1  OJ1581_H09.2  Oryza sativa Japonica Group   Basic helix-loop-helix factors (bHLH)  TCP domain 
MA1032.1  DREB1G  Oryza sativa Japonica Group   AP2/ERF domain 
MA1033.1  OJ1058_F05.8  Oryza sativa Japonica Group   Basic leucine zipper factors (bZIP) 
MA1034.1  Os05g0497200  Oryza sativa Japonica Group   AP2/ERF domain 
MA1035.1  TCP4  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH)  TCP domain 
MA1036.1  MYB111  Arabidopsis thaliana   Tryptophan cluster factors  Myb/SANT domain factors 
MA1037.1  MYB24  Arabidopsis thaliana   Tryptophan cluster factors  Myb/SANT domain factors 
MA1038.1  MYB3  Arabidopsis thaliana   Tryptophan cluster factors  Myb/SANT domain factors 
MA1039.1  MYB4  Arabidopsis thaliana   Tryptophan cluster factors  Myb/SANT domain factors 
MA1040.1  MYB46  Arabidopsis thaliana   Tryptophan cluster factors  Myb/SANT domain factors 
MA1041.1  MYB55  Arabidopsis thaliana   Tryptophan cluster factors  Myb/SANT domain factors 
MA1042.1  MYB59  Arabidopsis thaliana   Tryptophan cluster factors  Myb/SANT domain factors 
MA1043.1  NAC083  Arabidopsis thaliana   NAC/NAM 
MA1044.1  NAC92  Arabidopsis thaliana   NAC/NAM 
MA1045.1  NAC043  Arabidopsis thaliana   NAC/NAM 
MA1046.1  NTL9  Arabidopsis thaliana   NAC/NAM 
MA1047.1  TGA5  Arabidopsis thaliana   Basic leucine zipper factors (bZIP) 
MA1048.1  ERF018  Arabidopsis thaliana   AP2/ERF domain 
MA1049.1  ERF094  Arabidopsis thaliana   AP2/ERF domain 
MA1050.1  OsI_08196  Oryza sativa Indica Group   Basic helix-loop-helix factors (bHLH)  TCP domain 
MA1051.1  RAP2-3  Arabidopsis thaliana   AP2/ERF domain 
MA1052.1  RAP2-6  Arabidopsis thaliana   AP2/ERF domain 
MA1053.1  ERF109  Arabidopsis thaliana   AP2/ERF domain 
MA1054.1  ARALYDRAFT_897773  Arabidopsis lyrata subsp. lyrata   Basic helix-loop-helix factors (bHLH)  TCP domain 
MA1055.1  SPL1  Arabidopsis thaliana   SBP-type zinc finger 
MA1056.1  SPL11  Arabidopsis thaliana   SBP-type zinc finger 
MA1057.1  SPL12  Arabidopsis thaliana   SBP-type zinc finger 
MA1058.1  SPL4  Arabidopsis thaliana   SBP-type zinc finger 
MA1059.1  SPL5  Arabidopsis thaliana   SBP-type zinc finger 
MA1060.1  SPL7  Arabidopsis thaliana   SBP-type zinc finger 
MA1061.1  SPT  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH) 
MA1062.1  TCP15  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH)  TCP domain 
MA1063.1  TCP19  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH)  TCP domain 
MA1064.1  TCP2  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH)  TCP domain 
MA1065.1  TCP20  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH)  TCP domain 
MA1066.1  TCP23  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH)  TCP domain 
MA1067.1  TCP5  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH)  TCP domain 
MA1068.1  TGA2  Arabidopsis thaliana   Basic leucine zipper factors (bZIP) 
MA1069.1  TGA6  Arabidopsis thaliana   Basic leucine zipper factors (bZIP) 
MA1070.1  TGA7  Arabidopsis thaliana   Basic leucine zipper factors (bZIP) 
MA1071.1  DOF5.3  Arabidopsis thaliana   C2H2 zinc finger factors  Dof-type 
MA1073.1  TRB2  Arabidopsis thaliana   Tryptophan cluster factors  Myb/SANT domain factors 
MA1074.1  UNE10  Arabidopsis thaliana   Basic helix-loop-helix factors (bHLH) 
MA1075.1  WRKY12  Arabidopsis thaliana   WRKY 
MA1076.1  WRKY15  Arabidopsis thaliana   WRKY 
MA1077.1  WRKY18  Arabidopsis thaliana   WRKY 
MA1078.1  WRKY2  Arabidopsis thaliana   WRKY 
MA1079.1  WRKY21  Arabidopsis thaliana   WRKY 
MA1080.1  WRKY23  Arabidopsis thaliana   WRKY 
MA1081.1  WRKY25  Arabidopsis thaliana   WRKY 
MA1083.1  WRKY30  Arabidopsis thaliana   WRKY 
MA1084.1  WRKY38  Arabidopsis thaliana   WRKY 
MA1085.1  WRKY40  Arabidopsis thaliana   WRKY 
MA1086.1  WRKY43  Arabidopsis thaliana   WRKY 
MA1087.1  WRKY45  Arabidopsis thaliana   WRKY 
MA1088.1  WRKY48  Arabidopsis thaliana   WRKY 
MA1089.1  WRKY57  Arabidopsis thaliana   WRKY 
MA1090.1  WRKY60  Arabidopsis thaliana   WRKY 
MA1091.1  WRKY62  Arabidopsis thaliana   WRKY 
MA1092.1  WRKY63  Arabidopsis thaliana   WRKY 
MA1093.1  WRKY75  Arabidopsis thaliana   WRKY 
MA1094.1  WRKY8  Arabidopsis thaliana   WRKY 
MA1095.1  ARALYDRAFT_495258  Arabidopsis lyrata subsp. lyrata   Basic helix-loop-helix factors (bHLH)  TCP domain 
MA1096.1  ARALYDRAFT_496250  Arabidopsis lyrata subsp. lyrata   Basic helix-loop-helix factors (bHLH)  TCP domain 
MA1097.1  ARALYDRAFT_493022  Arabidopsis lyrata subsp. lyrata   Basic helix-loop-helix factors (bHLH)  TCP domain 
MA1098.1  ARALYDRAFT_484486  Arabidopsis lyrata subsp. lyrata   Basic helix-loop-helix factors (bHLH)  TCP domain 
 
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